Workflows for NGS data analysis
Open source software developed by the ARCTIC network to facilitate the analysis and visualization of SARS-CoV-2 genomic data.
Toolkit used for bioinformatic analysis of SARS-CoV-2 data from Illumina.
Toolkit used for bioinformatic analysis of SARS-CoV-2 data from Oxford Nanopore.
Bioinformatics protocol for transferring the output from the Oxford Nanopore sequencing protocol to genome consensus sequences.
A tool that identifies differences between the collected sequences and the reference sequence used by Nextstrain. Nextclate reports potential data sequence quality issues.
An app that allows SARS-COV-2 (hCoV-19) data to be transferred directly to GISAID, providing real-time selection and annotation before the EpiCoV database is available to the public.